Geant4 10.7 p01 installation error [Building CXX object ... TaskRunManager.cc.o]

[kayufung]

Hello,

I am going to install geant4 in a computer cluster.
I created two folder “g4-build” and “g4-install” for building and installation of geant4. The source is untared and located at the same level as “g4-build” and “g4-install”, all inside the folder “g4”.

The system cmake is an old cmake 2.8, so I mannually installed cmake version 3 in my account and then “cmake3” in “g4-build” :

cmake3 -DCMAKE_INSTALL_PREFIX=/home/t2k/kyfung/g4/g4-install -DGEANT4_INSTALL_DATADIR=/home/t2k/kyfung/g4/geant4.10.07.p01/data /home/t2k/kyfung/g4/geant4.10.07.p01

It showed “-- Build files have been written to: /home/t2k/kyfung/g4/g4-build” at the end. Then I “make”, it shows the following errors:

[kyfung@ccw01 g4-build]$ make
[ 0%] Building CXX object source/externals/ptl/CMakeFiles/ptl-shared.dir/src/TaskAllocator.cc.o
[ 0%] Building CXX object source/externals/ptl/CMakeFiles/ptl-shared.dir/src/TaskAllocatorList.cc.o
[ 0%] Building CXX object source/externals/ptl/CMakeFiles/ptl-shared.dir/src/TaskAllocatorPool.cc.o
[ 0%] Building CXX object source/externals/ptl/CMakeFiles/ptl-shared.dir/src/TaskRunManager.cc.o
In file included from /home/t2k/kyfung/g4/geant4.10.07.p01/source/externals/ptl/include/PTL/TBBTaskGroup.hh:32:0,
from /home/t2k/kyfung/g4/geant4.10.07.p01/source/externals/ptl/include/PTL/TaskRunManager.hh:28,
from /home/t2k/kyfung/g4/geant4.10.07.p01/source/externals/ptl/src/TaskRunManager.cc:22:
/home/t2k/kyfung/g4/geant4.10.07.p01/source/externals/ptl/include/PTL/TaskGroup.hh:125:24: error: function ‘PTL::JoinFunction<void, void>::JoinFunction(PTL::JoinFunction<void, void>&&)’ defaulted on its first declaration with an exception-specification that differs from the implicit declaration ‘PTL::JoinFunction<void, void>::JoinFunction(PTL::JoinFunction<void, void>&&)’
PTL_DEFAULT_OBJECT(JoinFunction)
^
/home/t2k/kyfung/g4/geant4.10.07.p01/source/externals/ptl/include/PTL/TaskGroup.hh:59:9: note: in definition of macro ‘PTL_DEFAULT_OBJECT’
NAME(NAME&&) noexcept = default;
^
/home/t2k/kyfung/g4/geant4.10.07.p01/source/externals/ptl/include/PTL/TaskGroup.hh:61:15: error: function ‘PTL::JoinFunction<void, void>& PTL::JoinFunction<void, void>::operator=(PTL::JoinFunction<void, void>&&)’ defaulted on its first declaration with an exception-specification that differs from the implicit declaration ‘PTL::JoinFunction<void, void>& PTL::JoinFunction<void, void>::operator=(PTL::JoinFunction<void, void>&&)’
NAME& operator=(NAME&&) noexcept = default;
^
/home/t2k/kyfung/g4/geant4.10.07.p01/source/externals/ptl/include/PTL/TaskGroup.hh:125:5: note: in expansion of macro ‘PTL_DEFAULT_OBJECT’
PTL_DEFAULT_OBJECT(JoinFunction)
^
make[2]: *** [source/externals/ptl/CMakeFiles/ptl-shared.dir/src/TaskRunManager.cc.o] Error 1
make[1]: *** [source/externals/ptl/CMakeFiles/ptl-shared.dir/all] Error 2
make: *** [all] Error 2
[kyfung@ccw01 g4-build]$

I have installed the geant4 10.7 p01 on a desktop CentOS7 successfully by the above cmake3 and make commands. Can anyone give some advice how to solve this error ?

Thank you.

The full cmake output:
[kyfung@ccw01 g4-build]$ cmake3 -DCMAKE_INSTALL_PREFIX=/home/t2k/kyfung/g4/g4-install -DGEANT4_INSTALL_DATADIR=/home/t2k/kyfung/g4/geant4.10.07.p01/data /home/t2k/kyfung/g4/geant4.10.07.p01
– The C compiler identification is GNU 4.8.5
– The CXX compiler identification is GNU 4.8.5
– Detecting C compiler ABI info
– Detecting C compiler ABI info - done
– Check for working C compiler: /usr/bin/gcc - skipped
– Detecting C compile features
– Detecting C compile features - done
– Detecting CXX compiler ABI info
– Detecting CXX compiler ABI info - done
– Check for working CXX compiler: /usr/bin/g++ - skipped
– Detecting CXX compile features
– Detecting CXX compile features - done
– Found EXPAT: /usr/lib64/libexpat.so (found version “2.1.0”)
– Reusing dataset G4NDL (4.6)
– Reusing dataset G4EMLOW (7.13)
– Reusing dataset PhotonEvaporation (5.7)
– Reusing dataset RadioactiveDecay (5.6)
– Reusing dataset G4PARTICLEXS (3.1.1)
– Reusing dataset G4PII (1.3)
– Reusing dataset RealSurface (2.2)
– Reusing dataset G4SAIDDATA (2.0)
– Reusing dataset G4ABLA (3.1)
– Reusing dataset G4INCL (1.0)
– Reusing dataset G4ENSDFSTATE (2.3)
– Looking for sys/types.h
– Looking for sys/types.h - found
– Looking for stdint.h
– Looking for stdint.h - found
– Looking for stddef.h
– Looking for stddef.h - found
– Check size of off64_t
– Check size of off64_t - done
– Looking for fseeko
– Looking for fseeko - found
– Looking for unistd.h
– Looking for unistd.h - found
– Looking for pthread.h
– Looking for pthread.h - found
– Performing Test CMAKE_HAVE_LIBC_PTHREAD
– Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
– Check if compiler accepts -pthread
– Check if compiler accepts -pthread - yes
– Found Threads: TRUE
– The following Geant4 features are enabled:
GEANT4_BUILD_CXXSTD: Compiling against C++ Standard ‘11’
GEANT4_USE_SYSTEM_EXPAT: Using system EXPAT library

– Configuring done
– Generating done
– Build files have been written to: /home/t2k/kyfung/g4/g4-build

[bmorgan]

@kayufung

– The C compiler identification is GNU 4.8.5
– The CXX compiler identification is GNU 4.8.5

Geant4 10.7 requires GCC 4.9.3 or newer, so you’ll need to point CMake to a newer compiler on the cluster. If it doesn’t have newer compilers installed already (e.g. via Software Collections Developer Toolset, or package managers like spack) you’ll need to get those in place first, then CMake can be pointed to them via the CC and CXX environment variables, e.g.

$ CC=/path/to/gcc CXX=/path/to/g++ cmake <args>

[kayufung]

It works now. Thank you for your help.

[msalman]

Hi

I am trying to install Geant4_10_07_p02 on macOS Big Sur 11.1 (Chip Apple M1). When I input make -j2, I get the following error:

ld: symbol(s) not found for architecture arm64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[2]: *** [BuildProducts/lib/libG4interfaces.dylib] Error 1

make[1]: *** [source/CMakeFiles/G4interfaces.dir/all] Error 2

make[1]: *** Waiting for unfinished jobs…

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make: *** [all] Error 2

Is there any fix for this?

Thanks in advance,

[bmorgan]

Please start a new thread to discuss your issue to avoid confusion and to help other users who might have the same problem.