XCode issue (My build is always failed every two weeks)

Sarah-Abdelaziz · December 13, 2024, 7:59pm

I have a repeated problem relate to XCode which affect on building Geant4 and the building of its modules. I do not have any idea what should I do? I try to contact with XCode Support but they could not help.

sarahabdelaziz@Sarahs-MacBook-Pro g4test % cd microyz-build 
sarahabdelaziz@Sarahs-MacBook-Pro microyz-build % cmake ../microyz
-- The C compiler identification is AppleClang 16.0.0.16000026
-- The CXX compiler identification is AppleClang 16.0.0.16000026
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found EXPAT: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.1.sdk/usr/lib/libexpat.tbd (Required is at least version "2.6.1")
CMake Deprecation Warning at /usr/local/lib/cmake/Geant4/PTL/PTLConfig.cmake:30 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.
Call Stack (most recent call first):
  /opt/homebrew/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package)
  /usr/local/lib/cmake/Geant4/Geant4Config.cmake:286 (find_dependency)
  CMakeLists.txt:15 (find_package)


-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found OpenGL: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.1.sdk/System/Library/Frameworks/OpenGL.framework
-- Found X11: /opt/homebrew/include
-- Looking for XOpenDisplay in /opt/homebrew/lib/libX11.dylib;/opt/homebrew/lib/libXext.dylib
-- Looking for XOpenDisplay in /opt/homebrew/lib/libX11.dylib;/opt/homebrew/lib/libXext.dylib - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found XQuartzGL: /usr/X11R6/include
-- Found Geant4: /usr/local/lib/cmake/Geant4/Geant4Config.cmake (found version "11.2.2")
-- Configuring done (3.9s)
CMake Error in CMakeLists.txt:
  Imported target "Geant4::G4Tree" includes non-existent path

    "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.1.sdk/usr/include"

  in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:

  * The path was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and references files it does not
  provide.



CMake Error in CMakeLists.txt:
  Imported target "Geant4::G4Tree" includes non-existent path

    "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.1.sdk/usr/include"

  in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:

  * The path was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and references files it does not
  provide.



-- Generating done (0.0s)
CMake Generate step failed.  Build files cannot be regenerated correctly.
sarahabdelaziz@Sarahs-MacBook-Pro microyz-build %

Could you help, please?
My mac is Sequoia 15.2, Xcode version is 16.2, geant4.11.2.2

jrellin · December 13, 2024, 10:47pm

Was it able to run previously? Can you run one of the basic examples?
It looks, at first glance, like a pathing issue. I am not too familiar with XCode but are the paths set to Geant4’s libraries?

bmorgan · December 14, 2024, 8:15am

The reason for this the presence of a file /usr/local/lib/cmake/Geant4/Geant4PackageCache.cmake which stores locations of packages used to build Geant4. System updates on macOS will change some of these locations, causing the regular failures you’re seeing. To resolve this, simply delete the /usr/local/lib/cmake/Geant4/Geant4Config.cmake file. This is safe as the file is only used if present.

To avoid this problem in future installs, either upgrade to Geant4 11.3 where this file is not installed by default, or install Geant4 with the GEANT4_INSTALL_PACKAGE_CACHE cmake option set to OFF.

Sarah-Abdelaziz · December 14, 2024, 10:02am

Yes, I did B1 example and another modules but suddenly it gave me this error. I do not why? It is not the first time.

Sarah-Abdelaziz · December 14, 2024, 10:03am

Thanks. I will download Geant4.11.3 and again build it and delete the v 11.2.2 with its build directory .
I hope this problem will be solved.

Sarah-Abdelaziz · December 14, 2024, 1:54pm

I make a new build. Then ccmake …

 The C compiler identification is AppleClang 16.0.0.16000026
 The CXX compiler identification is AppleClang 16.0.0.16000026
 Detecting C compiler ABI info
 Detecting C compiler ABI info - done
 Check for working C compiler:
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -
 skipped
 Detecting C compile features
 Detecting C compile features - done
 Detecting CXX compiler ABI info
 Detecting CXX compiler ABI info - done
 Check for working CXX compiler:
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -
 skipped
 Detecting CXX compile features
 Detecting CXX compile features - done
 Checking C++ feature CXXSTDLIB_FILESYSTEM_NATIVE - Success
 Performing Test HAVE_TLS
 Performing Test HAVE_TLS - Success
 Found EXPAT:
 /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.
 2.sdk/usr/lib/libexpat.tbd (found version "2.6.3")
 Reusing dataset G4NDL (4.7.1)
 Pre-configuring dataset G4EMLOW (8.6.1)
 Pre-configuring dataset PhotonEvaporation (6.1)
 Pre-configuring dataset RadioactiveDecay (6.1.2)
 Pre-configuring dataset G4PARTICLEXS (4.1)
 Reusing dataset G4PII (1.3)
 Reusing dataset RealSurface (2.2)
 Reusing dataset G4SAIDDATA (2.0)
 Reusing dataset G4ABLA (3.3)
 Reusing dataset G4INCL (1.2)
 Pre-configuring dataset G4ENSDFSTATE (3.0)
Pre-configuring dataset G4CHANNELING (1.0)
   *WARNING*
     Geant4 has been pre-configured to look for datasets
     in the directory:  

     /usr/local/share/Geant4/data

     but the following datasets are NOT present on disk at
     that location:

     G4EMLOW (8.6.1)    
     PhotonEvaporation (6.1)
     RadioactiveDecay (6.1.2)
     G4PARTICLEXS (4.1) 
     G4ENSDFSTATE (3.0) 
     G4CHANNELING (1.0) 

  -  If you have access to cvmfs, you can use standard datasets
     by reconfiguring with:
       cmake -DGEANT4_INSTALL_DATADIR=/cvmfs/geant4.cern.ch/share/data <...>
     The variable can also be set in ccmake or cmake-gui.
  -  If you want to have these datasets installed by Geant4,
     simply re-run cmake with GEANT4_INSTALL_DATA=ON. This will
     configure the build to download and install these datasets for you.
     For example, use:  
       cmake -DGEANT4_INSTALL_DATA=ON <otherargs>

     If you're running on a Windows system, this is the best
     solution as CMake will unpack the datasets for you
     without any further software being required

  -  Alternatively, you can install these datasets manually
     now or after you have installed Geant4. To do this,
     download the following files:

     https://cern.ch/geant4-data/datasets/G4EMLOW.8.6.1.tar.gz
     https://cern.ch/geant4-data/datasets/G4PhotonEvaporation.6.1.tar.gz
     https://cern.ch/geant4-data/datasets/G4RadioactiveDecay.6.1.2.tar.gz
     https://cern.ch/geant4-data/datasets/G4PARTICLEXS.4.1.tar.gz
     https://cern.ch/geant4-data/datasets/G4ENSDFSTATE.3.0.tar.gz
     https://cern.ch/geant4-data/datasets/G4CHANNELING.1.0.tar.gz

     and unpack them under the directory:

     /usr/local/share/Geant4/data

     As we supply the datasets packed in gzipped tar files,
     you will need the 'tar' utility to unpack them.

     Nota bene: Missing datasets will not affect or break
                compilation and installation of the Geant4
                libraries.

 Looking for sys/types.h
 Looking for sys/types.h - found
 Looking for stdint.h   
 Looking for stdint.h - found
 Looking for stddef.h   
 Looking for stddef.h - found
 Check size of off64_t  
 Check size of off64_t - failed
 Looking for fseeko
 Looking for fseeko - found
 Looking for unistd.h   
 Looking for unistd.h - found
 Performing Test G4ZLIB_NEEDS_DNP
 Performing Test G4ZLIB_NEEDS_DNP - Success
 Building PTL with option BUILD_STATIC_LIBS - OFF
 Building PTL with option BUILD_SHARED_LIBS - ON
 Building PTL with option BUILD_OBJECT_LIBS -
 Building PTL with CMAKE_CXX_STANDARD - 17
 Building PTL with option PTL_USE_COVERAGE -
 Building PTL with option PTL_USE_SANITIZER -
 Building PTL with option PTL_USE_CLANG_TIDY -
 Building PTL with option PTL_USE_TBB - OFF
 Building PTL with option PTL_USE_LOCKS - OFF
 Building PTL with option PTL_INSTALL_HEADERS - ON
 Building PTL with option PTL_INSTALL_CONFIG - ON
 Performing Test CMAKE_HAVE_LIBC_PTHREAD
 Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
 Found Threads: TRUE    
 The following Geant4 features are enabled:
 CMAKE_CXX_STANDARD: Compiling against C++ Standard '17'
 GEANT4_BUILD_MULTITHREADED: Build multithread enabled libraries
 GEANT4_BUILD_TLS_MODEL: Building with TLS model 'initial-exec'
 GEANT4_USE_SYSTEM_EXPAT: Using system EXPAT library

 Configuring done (3.3s)

Then press e

CMAKE_BUILD_TYPE                *Release                                                     
 CMAKE_INSTALL_PREFIX            */usr/local                                                  
 CMAKE_OSX_ARCHITECTURES         *                                                            
 CMAKE_OSX_DEPLOYMENT_TARGET     *                                                            
 CMAKE_OSX_SYSROOT               */Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.
 GEANT4_BUILD_MULTITHREADED      *ON                                                          
 GEANT4_INSTALL_DATA             *ON                                                          
 GEANT4_INSTALL_DATADIR          *                                                            
 GEANT4_USE_G3TOG4               *OFF                                                         
 GEANT4_USE_GDML                 *OFF                                                         
 GEANT4_USE_INVENTOR             *OFF                                                         
 GEANT4_USE_INVENTOR_QT          *OFF                                                         
 GEANT4_USE_OPENGL_X11           *OFF                                                         
 GEANT4_USE_QT                   *ON                                                          
 GEANT4_USE_RAYTRACER_X11        *OFF                                                         
 GEANT4_USE_SYSTEM_CLHEP         *ON                                                          
 GEANT4_USE_SYSTEM_EXPAT         *ON                                                          
 GEANT4_USE_SYSTEM_ZLIB          *OFF                                                         
 GEANT4_USE_VTK                  *OFF                                                         
 GEANT4_USE_XM                   *OFF

Then press c configure

CLHEP_DIR                       */opt/homebrew/lib/CLHEP-2.4.7.1                             
 QT_DIR                          */opt/homebrew/opt/qt@5/lib/cmake/Qt5                        
 Qt53DCore_DIR                   */opt/homebrew/opt/qt@5/lib/cmake/Qt53DCore                  
 Qt53DExtras_DIR                 */opt/homebrew/opt/qt@5/lib/cmake/Qt53DExtras                
 Qt53DInput_DIR                  */opt/homebrew/opt/qt@5/lib/cmake/Qt53DInput                 
 Qt53DLogic_DIR                  */opt/homebrew/opt/qt@5/lib/cmake/Qt53DLogic                 
 Qt53DRender_DIR                 */opt/homebrew/opt/qt@5/lib/cmake/Qt53DRender                
 Qt5Core_DIR                     */opt/homebrew/opt/qt@5/lib/cmake/Qt5Core                    
 Qt5Gamepad_DIR                  */opt/homebrew/opt/qt@5/lib/cmake/Qt5Gamepad                 
 Qt5Gui_DIR                      */opt/homebrew/opt/qt@5/lib/cmake/Qt5Gui                     
 Qt5Network_DIR                  */opt/homebrew/opt/qt@5/lib/cmake/Qt5Network                 
 Qt5OpenGL_DIR                   */opt/homebrew/opt/qt@5/lib/cmake/Qt5OpenGL                  
 Qt5Widgets_DIR                  */opt/homebrew/opt/qt@5/lib/cmake/Qt5Widgets                 
 Qt5_DIR                         */opt/homebrew/opt/qt@5/lib/cmake/Qt5                        
 CMAKE_BUILD_TYPE                 Release                                                     
 CMAKE_INSTALL_PREFIX             /usr/local                                                  
 CMAKE_OSX_ARCHITECTURES                                                                      
 CMAKE_OSX_DEPLOYMENT_TARGET                                                                  
 CMAKE_OSX_SYSROOT                /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.
 GEANT4_BUILD_MULTITHREADED       ON                                                          
 GEANT4_INSTALL_DATA              ON                                                          
 GEANT4_INSTALL_DATADIR                                                                       
 GEANT4_USE_G3TOG4                OFF                                                         
 GEANT4_USE_GDML                  OFF                                                         
 GEANT4_USE_INVENTOR              OFF                                                         
 GEANT4_USE_INVENTOR_QT           OFF                                                         
 GEANT4_USE_OPENGL_X11            OFF                                                         
 GEANT4_USE_QT                    ON                                                          
 GEANT4_USE_RAYTRACER_X11         OFF                                                         
 GEANT4_USE_SYSTEM_CLHEP          ON                                                          
 GEANT4_USE_SYSTEM_EXPAT          ON                                                          
 GEANT4_USE_SYSTEM_ZLIB           OFF

Then cmake

sarahabdelaziz@Sarahs-MacBook-Pro build % cmake ..
-- Checking C++ feature CXXSTDLIB_FILESYSTEM_NATIVE - Success
-- Reusing dataset G4NDL (4.7.1)
-- Configuring download of missing dataset G4EMLOW (8.6.1)
-- Configuring download of missing dataset PhotonEvaporation (6.1)
-- Configuring download of missing dataset RadioactiveDecay (6.1.2)
-- Configuring download of missing dataset G4PARTICLEXS (4.1)
-- Reusing dataset G4PII (1.3)
-- Reusing dataset RealSurface (2.2)
-- Reusing dataset G4SAIDDATA (2.0)
-- Reusing dataset G4ABLA (3.3)
-- Reusing dataset G4INCL (1.2)
-- Configuring download of missing dataset G4ENSDFSTATE (3.0)
-- Configuring download of missing dataset G4CHANNELING (1.0)
-- The following Geant4 features are enabled:
CMAKE_CXX_STANDARD: Compiling against C++ Standard '17'
GEANT4_BUILD_MULTITHREADED: Build multithread enabled libraries
GEANT4_BUILD_TLS_MODEL: Building with TLS model 'initial-exec'
GEANT4_USE_SYSTEM_CLHEP: Using system CLHEP library
GEANT4_USE_SYSTEM_EXPAT: Using system EXPAT library
GEANT4_USE_QT: Build Geant4 with Qt5 support
GEANT4_USE_QT3D: Build Geant4 Qt3D driver

-- Configuring done (1.6s)
-- Generating done (0.8s)
-- Build files have been written to: /Users/sarahabdelaziz/Downloads/geant4-v11.3.0/build

Then sudo make install
Then make

@Sarahs-MacBook-Pro build % make
[  0%] Built target G4EMLOW
[  0%] Built target PhotonEvaporation
[  0%] Built target RadioactiveDecay
[  1%] Built target G4PARTICLEXS
[  1%] Built target G4ENSDFSTATE
[  1%] Built target G4CHANNELING
[  1%] Built target ptl-shared
[  3%] Built target G4global
[  3%] Built target G4intercoms
[  4%] Built target G4zlib
[  6%] Built target G4analysis
[  7%] Built target G4graphics_reps
[  8%] Built target G4materials
[ 17%] Built target G4geometry
[ 23%] Built target G4particles
[ 23%] Built target G4track
[ 25%] Built target G4digits_hits
[ 80%] Built target G4processes
[ 81%] Built target G4tracking
[ 82%] Built target G4event
[ 84%] Built target G4run
[ 85%] Built target G4error_propagation
[ 85%] Built target G4interfaces_autogen_timestamp_deps
[ 85%] Built target G4interfaces_autogen
[ 86%] Built target G4interfaces
[ 86%] Built target G4parmodels
[ 87%] Built target G4geomtext
[ 88%] Built target G4mctruth
[ 95%] Built target G4physicslists
[ 95%] Built target G4readout
[ 96%] Built target G4modeling
[ 97%] Built target G4vis_management
[ 97%] Built target G4FR
[ 97%] Built target G4visHepRep
[ 97%] Built target G4RayTracer
[ 97%] Built target G4Tree
[ 97%] Built target G4VRML
[ 98%] Built target G4GMocren
[ 98%] Built target G4ToolsSG_autogen_timestamp_deps
[100%] Built target G4ToolsSG_autogen
[100%] Built target G4ToolsSG
[100%] Built target G4OpenGL_autogen_timestamp_deps
[100%] Built target G4OpenGL_autogen
[100%] Built target G4OpenGL
[100%] Built target G4visQt3D
sarahabdelaziz@Sarahs-MacBook-Pro build %

Is it OK?

bmorgan · December 14, 2024, 3:14pm

I would suggest switching to Qt6 so you don’t have to join things to Qt5 continually. It should be sufficient to rerun cmake as:

$ cmake -DGEANT4_USE_QT_QT6=ON ..

and then rebuild (i.e. not a full build from scratch, unless you get errors).

Sarah-Abdelaziz · December 14, 2024, 3:24pm

sarahabdelaziz@Sarahs-MacBook-Pro build % ls
BuildProducts			LICENSE.txt
CMakeCPackOptions.cmake		Makefile
CMakeCache.txt			Modules
CMakeFiles			README.txt
CPackConfig.cmake		UseGeant4.cmake
CPackSourceConfig.cmake		_source_extras
Externals			cmake_install.cmake
G4EXPATShim.cmake		cmake_uninstall.cmake
G4FreetypeShim.cmake		cmake_uninstall.cmake.in
G4HDF5Shim.cmake		cxx_filesystem
G4ModuleAdjacencyList.txt	data
G4ModuleInterfaceMap.csv	geant4-config
G4MotifShim.cmake		geant4_module_check.py
G4X11Shim.cmake			geant4_validate_sources.cmake
Geant4Config.cmake		geant4make.csh
Geant4ConfigVersion.cmake	geant4make.sh
Geant4LibraryDepends.cmake	install_manifest.txt
Geant4PackageCache.cmake	source
InstallTreeFiles		source_package_extras.cmake

sarahabdelaziz@Sarahs-MacBook-Pro B1 % ls
CMakeLists.txt README exampleB1.out run1.mac vis.mac
GNUmakefile exampleB1.cc include run2.mac
History exampleB1.in init_vis.mac src
sarahabdelaziz@Sarahs-MacBook-Pro B1 % mkdir build
sarahabdelaziz@Sarahs-MacBook-Pro B1 % cd build
sarahabdelaziz@Sarahs-MacBook-Pro build % cmake …
– The C compiler identification is AppleClang 16.0.0.16000026
– The CXX compiler identification is AppleClang 16.0.0.16000026
– Detecting C compiler ABI info
– Detecting C compiler ABI info - done
– Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc - skipped
– Detecting C compile features
– Detecting C compile features - done
– Detecting CXX compiler ABI info
– Detecting CXX compiler ABI info - done
– Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ - skipped
– Detecting CXX compile features
– Detecting CXX compile features - done
– Found EXPAT: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.1.sdk/usr/lib/libexpat.tbd (Required is at least version “2.6.3”)
– Performing Test CMAKE_HAVE_LIBC_PTHREAD
– Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
– Found Threads: TRUE
– Found OpenGL: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.1.sdk/System/Library/Frameworks/OpenGL.framework
– Found Geant4: /usr/local/lib/cmake/Geant4/Geant4Config.cmake (found version “11.3.0”)
– Configuring done (1.0s)
CMake Error in CMakeLists.txt:
Imported target “Geant4::G4Tree” includes non-existent path

"/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.1.sdk/usr/include"

in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include:

The path was deleted, renamed, or moved to another location.
An install or uninstall procedure did not complete successfully.
The installation package was faulty and references files it does not
provide.

CMake Error in CMakeLists.txt:
Imported target “Geant4::G4Tree” includes non-existent path

"/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.1.sdk/usr/include"

in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include:

The path was deleted, renamed, or moved to another location.
An install or uninstall procedure did not complete successfully.
The installation package was faulty and references files it does not
provide.

– Generating done (0.0s)
CMake Generate step failed. Build files cannot be regenerated correctly.
sarahabdelaziz@Sarahs-MacBook-Pro build %

Again I have the same problem to build B1? Could you help me, please?

Sarah-Abdelaziz · December 14, 2024, 3:35pm

Also, After I installed Qt6 and write your line to cmake, I got

Warning: Unbrewed '.pc' files were found in /usr/local/lib/pkgconfig.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae and may need to be deleted.

Unexpected '.pc' files:
  /usr/local/lib/pkgconfig/G4ptl.pc

What does it mean?

Sarah-Abdelaziz · December 14, 2024, 3:42pm

I try to do brew doctor, then

sarahabdelaziz@Sarahs-MacBook-Pro ~ % cat /usr/local/lib/pkgconfig/G4ptl.pc
prefix=/usr/local
includedir=${prefix}/include/Geant4
libdir=${prefix}/lib

Name: G4PTL
Description: Parallel Tasking Library for C++ (Geant4 Builtin)
Version: 3.0.0
Requires: 
Libs: -L${libdir} -lG4ptl
Libs.private: -pthread
CFlags: -std=c++17 -pthread -I${includedir}
sarahabdelaziz@Sarahs-MacBook-Pro ~ % mkdir -p /opt/geant4/lib/pkgconfig
mv /usr/local/lib/pkgconfig/G4ptl.pc /opt/geant4/lib/pkgconfig/
mkdir: /opt/geant4: Permission denied
mv: rename /usr/local/lib/pkgconfig/G4ptl.pc to /opt/geant4/lib/pkgconfig/: No such file or directory
sarahabdelaziz@Sarahs-MacBook-Pro ~ % mkdir -p /opt/geant4/lib/pkgconfig
mkdir: /opt/geant4: Permission denied
sarahabdelaziz@Sarahs-MacBook-Pro ~ % sudo mkdir -p /opt/geant4/lib/pkgconfig
Password:
sarahabdelaziz@Sarahs-MacBook-Pro ~ % mv /usr/local/lib/pkgconfig/G4ptl.pc /opt/geant4/lib/pkgconfig/
mv: rename /usr/local/lib/pkgconfig/G4ptl.pc to /opt/geant4/lib/pkgconfig/G4ptl.pc: Permission denied
sarahabdelaziz@Sarahs-MacBook-Pro ~ % sudo mv /usr/local/lib/pkgconfig/G4ptl.pc /opt/geant4/lib/pkgconfig/
sarahabdelaziz@Sarahs-MacBook-Pro ~ % export PKG_CONFIG_PATH=/opt/geant4/lib/pkgconfig:$PKG_CONFIG_PATH
sarahabdelaziz@Sarahs-MacBook-Pro ~ % echo 'export PKG_CONFIG_PATH=/opt/geant4/lib/pkgconfig:$PKG_CONFIG_PATH' >> ~/.zshrc
sarahabdelaziz@Sarahs-MacBook-Pro ~ % nano ~/.zshrc 
export PATH="/opt/homebrew/bin:$PATH"

export CMAKE_PREFIX_PATH="/opt/homebrew/opt/qt@6:$CMAKE_PREFIX_PATH"
pushd /usr/local/bin
source ./geant4.sh
popd




export PKG_CONFIG_PATH=/opt/geant4/lib/pkgconfig:$PKG_CONFIG_PATH

Is it OK?

bmorgan · December 14, 2024, 4:30pm

No. Moving files around isn’t going to solve the issue and is now causing more problems. Follow the points below closely please - I apologise for the length, but this is the only way to really get to the bottom of the issue:

Delete everything under /opt/geant4
Find all the Geant4 files you’ve installed under /usr/local and delete them. This should be
- /usr/local/include/Geant4
- /usr/local/lib/libG4*
- /usr/local/lib/cmake/Geant4
- /usr/local/share/Geant4
- Anything related to PTL

Remove the lines from your .zshrc:

export CMAKE_PREFIX_PATH="/opt/homebrew/opt/qt@6:$CMAKE_PREFIX_PATH"
pushd /usr/local/bin
source ./geant4.sh
popd

export PKG_CONFIG_PATH=/opt/geant4/lib/pkgconfig:$PKG_CONFIG_PATH

Exit the current terminal and start a new one, and check that the above are no longer set in the environment.

Now delete any and all Geant4 source directories and build directories you have (yes, we’re going to start from scratch here).

Unpack the Geant4 11.3.0 tarball again somewhere under your home directory. So that I can be clear, let’s call this “geant4”, so we would do:

$ cd
$ mkdir geant4
$ cd geant4
$ tar -xvf /path/to/wherever/you/have/geant4-v11.3.0.tar.gz
$ ls
geant4-v11.3.0

Now configure the build exactly as follows:

$ mkdir build-11.3.0
$ cd build-11.3.0
$ cmake -DCMAKE_INSTALL_PREFIX=/opt/geant4/11.3.0 -DGEANT4_USE_QT=ON -DGEANT4_USE_QT_QT6=ON -DGEANT4_INSTALL_DATA=ON ../geant4-v11.3.0

This should complete without error, if not, post the output here.

Now build and install as:

$ make -j4
$ sudo make install

Check that /opt/geant4/11.3.0 is populated.

Now try and build the B1 example as follows:

$ cd
$ cd geant4
$ cp -R geant4-v11.3.0/examples/basic/B1 .
$ cd B1
$ mkdir build
$ cd build
$ cmake -DCMAKE_PREFIX_PATH=/opt/geant4/11.3.0 ..

This should complete without error, if not, post the output here.

Now try and build:
```
$ make
```
and run:
```
$ ./exampleB1
```

Sarah-Abdelaziz · December 14, 2024, 5:19pm

$ mkdir build-11.3.0

this under geant4-v11.3.0 or under geant4?

bmorgan · December 14, 2024, 5:25pm

Under geant4, or in full:

bmorgan:

$ cd
$ mkdir geant4
$ cd geant4
$ tar -xvf /path/to/wherever/you/have/geant4-v11.3.0.tar.gz
$ ls
geant4-v11.3.0
$ mkdir build-11.3.0
$ ls
geant4-v11.3.0  build-v11.3.0
$ cd build-11.3.0

Sarah-Abdelaziz · December 14, 2024, 5:29pm

Thanks. What should I write under ~/.zshrc? Now it is at the step of cmake

$ cmake -DCMAKE_INSTALL_PREFIX=/opt/geant4/11.3.0 -DGEANT4_USE_QT=ON -DGEANT4_USE_QT_QT6=ON -DGEANT4_INSTALL_DATA=ON ../geant4-v11.3.0

bmorgan · December 14, 2024, 5:38pm

For now, nothing. If brew is installed and set up correctly, and it seems that it is so far, then no additional settings are needed in .zshrc.

Sarah-Abdelaziz · December 14, 2024, 5:40pm

sarahabdelaziz@Sarahs-MacBook-Pro build-11.3.0 %  cmake -DCMAKE_INSTALL_PREFIX=/opt/geant4/11.3.0 -DGEANT4_USE_QT=ON -DGEANT4_USE_QT_QT6=ON -DGEANT4_INSTALL_DATA=ON ../geant4-v11.3.0 
-- The C compiler identification is AppleClang 16.0.0.16000026
-- The CXX compiler identification is AppleClang 16.0.0.16000026
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Checking C++ feature CXXSTDLIB_FILESYSTEM_NATIVE - Success
-- Performing Test HAVE_TLS
-- Performing Test HAVE_TLS - Success
-- Found EXPAT: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.2.sdk/usr/lib/libexpat.tbd (found version "2.6.3")
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Performing Test HAVE_STDATOMIC
-- Performing Test HAVE_STDATOMIC - Success
-- Found WrapAtomic: TRUE
-- Found OpenGL: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.2.sdk/System/Library/Frameworks/OpenGL.framework
-- Found WrapOpenGL: TRUE
-- Could NOT find WrapVulkanHeaders (missing: Vulkan_INCLUDE_DIR) 
-- Could NOT find WrapVulkanHeaders (missing: Vulkan_INCLUDE_DIR) 
-- Configuring download of missing dataset G4NDL (4.7.1)
-- Configuring download of missing dataset G4EMLOW (8.6.1)
-- Configuring download of missing dataset PhotonEvaporation (6.1)
-- Configuring download of missing dataset RadioactiveDecay (6.1.2)
-- Configuring download of missing dataset G4PARTICLEXS (4.1)
-- Configuring download of missing dataset G4PII (1.3)
-- Configuring download of missing dataset RealSurface (2.2)
-- Configuring download of missing dataset G4SAIDDATA (2.0)
-- Configuring download of missing dataset G4ABLA (3.3)
-- Configuring download of missing dataset G4INCL (1.2)
-- Configuring download of missing dataset G4ENSDFSTATE (3.0)
-- Configuring download of missing dataset G4CHANNELING (1.0)
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of off64_t
-- Check size of off64_t - failed
-- Looking for fseeko
-- Looking for fseeko - found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Performing Test G4ZLIB_NEEDS_DNP
-- Performing Test G4ZLIB_NEEDS_DNP - Success
-- Building PTL with option BUILD_STATIC_LIBS - OFF
-- Building PTL with option BUILD_SHARED_LIBS - ON
-- Building PTL with option BUILD_OBJECT_LIBS - 
-- Building PTL with CMAKE_CXX_STANDARD - 17
-- Building PTL with option PTL_USE_COVERAGE - 
-- Building PTL with option PTL_USE_SANITIZER - 
-- Building PTL with option PTL_USE_CLANG_TIDY - 
-- Building PTL with option PTL_USE_TBB - OFF
-- Building PTL with option PTL_USE_LOCKS - OFF
-- Building PTL with option PTL_INSTALL_HEADERS - ON
-- Building PTL with option PTL_INSTALL_CONFIG - ON
-- The following Geant4 features are enabled:
CMAKE_CXX_STANDARD: Compiling against C++ Standard '17'
GEANT4_BUILD_MULTITHREADED: Build multithread enabled libraries
GEANT4_BUILD_TLS_MODEL: Building with TLS model 'initial-exec'
GEANT4_USE_SYSTEM_EXPAT: Using system EXPAT library
GEANT4_USE_QT: Build Geant4 with Qt6 support
GEANT4_USE_QT3D: Build Geant4 Qt3D driver

-- Configuring done (4.1s)
-- Generating done (1.0s)
-- Build files have been written to: /Users/sarahabdelaziz/g4test/geant4/build-11.3.0
sarahabdelaziz@Sarahs-MacBook-Pro build-11.3.0 % make -j4
[  0%] Creating directories for 'PhotonEvaporation'
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-- Downloading...
   dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/PhotonEvaporation-6.1/src/G4PhotonEvaporation.6.1.tar.gz'
   timeout='1500 seconds'
   inactivity timeout='none'
-- Using src='https://cern.ch/geant4-data/datasets/G4PhotonEvaporation.6.1.tar.gz'
-- Downloading...
   dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/RadioactiveDecay-6.1.2/src/G4RadioactiveDecay.6.1.2.tar.gz'
   timeout='1500 seconds'
   inactivity timeout='none'
-- Using src='https://cern.ch/geant4-data/datasets/G4RadioactiveDecay.6.1.2.tar.gz'
-- Downloading...
   dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4EMLOW-8.6.1/src/G4EMLOW.8.6.1.tar.gz'
   timeout='1500 seconds'
   inactivity timeout='none'
-- Using src='https://cern.ch/geant4-data/datasets/G4EMLOW.8.6.1.tar.gz'
-- Downloading...
   dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4NDL-4.7.1/src/G4NDL.4.7.1.tar.gz'
   timeout='1500 seconds'
   inactivity timeout='none'
-- Using src='https://cern.ch/geant4-data/datasets/G4NDL.4.7.1.tar.gz'
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-- verifying file...
       file='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/RadioactiveDecay-6.1.2/src/G4RadioactiveDecay.6.1.2.tar.gz'
-- Downloading... done
-- extracting...
     src='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/RadioactiveDecay-6.1.2/src/G4RadioactiveDecay.6.1.2.tar.gz'
     dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/data/RadioactiveDecay6.1.2'
-- extracting... [tar xfz]
-- [download 9% complete]
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-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
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-- [download 11% complete]
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-- [download 12% complete]
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-- Downloading...
   dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4PARTICLEXS-4.1/src/G4PARTICLEXS.4.1.tar.gz'
   timeout='1500 seconds'
   inactivity timeout='none'
-- Using src='https://cern.ch/geant4-data/datasets/G4PARTICLEXS.4.1.tar.gz'
-- [download 13%

Sarah-Abdelaziz · December 14, 2024, 5:41pm

-- [download 100% complete]
-- [download 74% complete]
-- verifying file...
       file='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4PARTICLEXS-4.1/src/G4PARTICLEXS.4.1.tar.gz'
-- Downloading... done
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-- extracting...
     src='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4PARTICLEXS-4.1/src/G4PARTICLEXS.4.1.tar.gz'
     dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/data/G4PARTICLEXS4.1'
-- extracting... [tar xfz]
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-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
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[  0%] Performing download step (download, verify and extract) for 'G4PII'
-- Downloading...
   dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4PII-1.3/src/G4PII.1.3.tar.gz'
   timeout='1500 seconds'
   inactivity timeout='none'
-- Using src='https://cern.ch/geant4-data/datasets/G4PII.1.3.tar.gz'
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-- verifying file...
       file='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/PhotonEvaporation-6.1/src/G4PhotonEvaporation.6.1.tar.gz'
-- [download 41% complete]
-- Downloading... done
-- [download 42% complete]
-- extracting...
     src='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/PhotonEvaporation-6.1/src/G4PhotonEvaporation.6.1.tar.gz'
     dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/data/PhotonEvaporation6.1'
-- extracting... [tar xfz]
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-- extracting... [analysis]
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-- extracting... [clean up]
-- extracting... done
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-- Downloading...
   dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/RealSurface-2.2/src/G4RealSurface.2.2.tar.gz'
   timeout='1500 seconds'
   inactivity timeout='none'
-- Using src='https://cern.ch/geant4-data/datasets/G4RealSurface.2.2.tar.gz'
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-- verifying file...
       file='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4PII-1.3/src/G4PII.1.3.tar.gz'
-- Downloading... done
-- extracting...
     src='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4PII-1.3/src/G4PII.1.3.tar.gz'
     dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/data/G4PII1.3'
-- extracting... [tar xfz]
-- [download 2% complete]
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-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
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[  2%] No build step for 'G4PII'
[  2%] No install step for 'G4PII'
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[  2%] Built target G4PII
[  2%] Creating directories for 'G4SAIDDATA'
[  2%] Performing download step (download, verify and extract) for 'G4SAIDDATA'
-- Downloading...
   dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4SAIDDATA-2.0/src/G4SAIDDATA.2.0.tar.gz'
   timeout='1500 seconds'
   inactivity timeout='none'
-- Using src='https://cern.ch/geant4-data/datasets/G4SAIDDATA.2.0.tar.gz'
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-- verifying file...
       file='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4SAIDDATA-2.0/src/G4SAIDDATA.2.0.tar.gz'
-- Downloading... done
-- extracting...
     src='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4SAIDDATA-2.0/src/G4SAIDDATA.2.0.tar.gz'
     dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/data/G4SAIDDATA2.0'
-- extracting... [tar xfz]
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[  2%] Performing download step (download, verify and extract) for 'G4ABLA'
-- Downloading...
   dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4ABLA-3.3/src/G4ABLA.3.3.tar.gz'
   timeout='1500 seconds'
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-- Using src='https://cern.ch/geant4-data/datasets/G4ABLA.3.3.tar.gz'
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-- Downloading... done
-- extracting...
     src='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4ABLA-3.3/src/G4ABLA.3.3.tar.gz'
     dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/data/G4ABLA3.3'
-- extracting... [tar xfz]
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-- extracting... [clean up]
-- extracting... done
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[  2%] Performing download step (download, verify and extract) for 'G4INCL'
-- Downloading...
   dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4INCL-1.2/src/G4INCL.1.2.tar.gz'
   timeout='1500 seconds'
   inactivity timeout='none'
-- Using src='https://cern.ch/geant4-data/datasets/G4INCL.1.2.tar.gz'
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-- verifying file...
       file='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4INCL-1.2/src/G4INCL.1.2.tar.gz'
-- Downloading... done
-- extracting...
     src='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/Externals/G4INCL-1.2/src/G4INCL.1.2.tar.gz'
     dst='/Users/sarahabdelaziz/g4test/geant4/build-11.3.0/data/G4INCL1.2'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
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Sarah-Abdelaziz · December 14, 2024, 5:42pm

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Sarah-Abdelaziz · December 14, 2024, 5:42pm

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Sarah-Abdelaziz · December 14, 2024, 5:43pm

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